NAME

fu-sort - Sort sequences by size

VERSION

version 1.5.8

EXAMPLES

  fu-sort seq.fa > sorted.fa

PARAMETERS

--asc

Print in ascending order (defaul: descending)

--al|add-length

Add length=LEN to the comment

--help

This help

--version

Print version and exit

--quiet

No screen output (default OFF)

--debug

Debug mode (default OFF)

Common options

--w|line-width [N]

FASTA line size (0 for unlimited)

--sc|strip-comments

Strip comments

--fasta

Force FASTA output

--fastq

Force FASTQ output

--rc

Print reverse complementary

--q|qual [n.n]

Default quality for FASTQ files

--u|upper

Convert sequence to uppercase

MODERN ALTERNATIVE

This suite of tools has been superseded by SeqFu, a compiled program providing faster and safer tools for sequence analysis. This suite is maintained for the higher portability of Perl scripts under certain circumstances.

SeqFu is available at https://github.com/telatin/seqfu2, and can be installed with BioConda conda install -c bioconda seqfu

CITING

Telatin A, Fariselli P, Birolo G. SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files. Bioengineering 2021, 8, 59. https://doi.org/10.3390/bioengineering8050059

AUTHOR

Andrea Telatin <andrea@telatin.com>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2018-2023 by Andrea Telatin.

This is free software, licensed under:

  The MIT (X11) License